In vitro Biology

In vitro biology studies biological processes outside of a living organism in a controlled laboratory environment. It involves cell culture, which grows animal, plant, or microbial cells under sterile conditions. Applications include medical research, tissue engineering, plant biotechnology, and toxicology. Tools include laminar flow hoods, incubators, microscopy, and molecular biology tools. Advantages include controlled conditions, reproducibility, and reduced animal testing. Limitations include not replicating complex interactions and varying cell behavior.

Cell Biology

  • Cytotoxicity Assay
  • Cell Proliferation Assays
  • Gene/Protein Expression Biomarkers

Microbiology

  • MIC/MBC/Kill Kinetics
  • Bacteria (Gram + / Gram -)
  • Virus, Fungi, Parasite,

Cell Biology

Cytotoxicity Assay

A cytotoxicity assay is a laboratory test used to assess the toxicity of a substance on cells, crucial in drug discovery, toxicology studies, and environmental monitoring, involving cell seeding, treatment, incubation, reaction, reading, and data analysis.

Cell Proliferation Assays

Cell Proliferation Assays are crucial experimental techniques used to measure cell growth and division over time. They are used in various research areas, including cancer biology, toxicology, drug development, and regenerative medicine. Key aspects of these assays include colonimetric assays like MTT, XTT, and MTS, DNA synthesis assays like BrdU/EdU, ATP assays like CellTiter-Glo, resazurin reduction assays, manual or automated cell counting, CFSE dye dilution, and colony formation assays. Key considerations include assay sensitivity and specificity, cell type and experimental duration, potential drug interference, and normalization.

Gene/Protein Expression

Biomarkers are biological molecules that indicate a biological state, often related to disease or health status. Gene and protein expression biomarkers measure mRNA levels and protein presence, respectively, and are used for early disease detection, prognosis, therapeutic response, and drug development. Detection methods include RT-qPCR, microarrays, RNA-Seq, and ELISA.

Microbiology

MIC/MBC/Kill Kinetics

The minimum inhibitory concentration (MIC) is a method to determine the effectiveness of an antimicrobial agent against a microorganism, using methods like agar dilution and broth dilution to prevent visible growth.

Minimum bactericidal concentration (MBC) is the lowest concentration of an antibacterial agent needed to kill a specific bacterium. It is determined from broth dilution minimum inhibitory concentration (MIC) tests and is typically four times the MIC. MBC can be used as a metric for antimicrobial resistance (AMR) and is measured in ug/m.
Killing kinetics refers to the rate at which a drug, disinfectant, or antimicrobial agent kills microorganisms, often measured using log reduction, D-value, or kill curves. It can also be used in biochemistry, pesticide research, toxicology, and theoretical modeling.

Bacteria (Gram + / Gram -)

Gram-positive and Gram-negative bacteria are two major classes based on their cell wall structure, determined by Gram staining. Gram-positive bacteria have a thick peptidoglycan layer (20-80 nm) with no outer membrane and teichoic acids, resulting in purple or blue staining. They are more sensitive to antibiotics and less resistant to physical disruption. Gram-negative bacteria have a thin peptidoglycan layer (2-7 nm) with an outer membrane containing lipopolysaccharides and a periplasmic space.

Virus, Fungi, Parasite

Test assays are used for detecting and identifying viruses, fungi, and parasites in clinical, environmental, or research settings. Viral assays, such as PCR/RT-PCR, detect viral DNA/RNA, antibodies, and viral antigens. Fungal assays, such as direct microscopy, culture, PCR, Beta-D-Glucan, Galactomannan, and histopathology, visualize fungal elements in clinical samples. Parasitic assays, such as microscopy, antigen detection tests, serological tests, PCR, and rapid diagnostic tests, detect antibodies against parasites, and provide field-friendly, quick results.